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IUIS classification of predominantly antibody deficiencies (category III inborn errors of immunity)

IUIS classification of predominantly antibody deficiencies (category III inborn errors of immunity)
Disease Genetic defect Inheritance OMIM Immunoglobulin Associated features
Severe reduction in all serum immunoglobulin isotypes with profoundly decreased or absent B cells, agammaglobulinemia
BTK deficiency, XL agammaglobulinemia (XLA) Bruton tyrosine kinase (BTK) XL 300300 All isotypes decreased in major of patients; some patients have detectable immunoglobulins Severe bacterial infections, normal numbers of pro-B cells
Mu heavy-chain deficiency Immunoglobulin heavy constant mu (IGHM) AR 147020 All isotypes decreased Severe bacterial infections normal numbers of pro-B cells
Lambda 5 deficiency Immunoglobulin lambda-like polypeptide 1 (IGLL1) AR 146770 All isotypes decreased Severe bacterial infections, normal numbers of pro-B cells
Immunoglobulin alpha deficiency CD79a molecule (CD79A) AR 112205 All isotypes decreased Severe bacterial infections, normal numbers of pro-B cells
Immunoglobulin beta deficiency CD79b molecule (CD79B) AR 147245 All isotypes decreased Severe bacterial infections, normal numbers of pro-B cells
BLNK deficiency B cell linker (BLNK) AR 604515 All isotypes decreased Severe bacterial infections, normal numbers of pro-B cells
p110 delta deficiency Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta (PIK3CD) AR 602839 All isotypes decreased Severe bacterial infections, autoimmune complications (IBD)
p85 deficiency Phosphoinositide-3-kinase regulatory subunit 1 (PIK3R1) AR 615214 All isotypes decreased Severe bacterial infections, cytopenias, decreased or absent pro-B cells
E47 transcription factor deficiency Transcription factor 3 (TCF3) AD 616941 All isotypes decreased Recurrent bacterial infections
AR 147141 All isotypes decreased Severe, recurrent bacterial infections; failure to thrive
SLC39A7 (ZIP7) deficiency Solute carrier family 39 member 7 (SLC39A7) AR 601416 All isotypes decreased Early-onset infections, blistering dermatosis, failure to thrive, thrombocytopenia
Hoffman syndrome/TOP2B deficiency DNA topoisomerase II beta (TOP2B) AD 126431 All isotypes decreased Recurrent infections, facial dysmorphism, limb anomalies
FNIP1 deficiency Folliculin interacting protein 1 (FNIP1) AR 619705 All isotypes decreased Early-onset recurrent infections, bronchiectasis, fibrosis, interstitial pneumoniae, neutropenia (severe or intermittent, Crohn disease (1 patient), congenital heart defects, muscular hypotonia, developmental delay
PU1 deficiency Spi-1 proto-oncogene (SPI1) AD 619707 All isotypes decreased Sinopulmonary infections with encapsulated bacteria, viral infections
Severe reduction in at least 2 serum immunoglobulin isotypes with normal or low number of B cell, CVID phenotype
CVID with no gene defect specified Unknown Variable   Low IgG and IgA and/or IgM Clinical phenotypes vary; most have recurrent infections; some have polyclonal lymphoproliferation, autoimmune cytopenias, and/or granulomatous disease
Activated p110 delta syndrome (APDS) Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta (PIK3CD) GOF AD 615513 (APDS1) Normal/increased IgM; reduced IgG and IgA Severe bacterial infections, reduced memory B cells and increased transitional B cells, EBV and/or CMV viremia, lymphadenopathy/splenomegaly, autoimmunity, lymphoproliferation, lymphoma
Phosphoinositide-3-kinase regulatory subunit 1 (PIK3R1) AD 616005 (APDS2) Normal/increased IgM; reduced IgG and IgA Severe bacterial infections, reduced memory B cells and increased transitional B cells, lymphadenopathy/splenomegaly, lymphoproliferation, lymphoma, developmental delay
PTEN deficiency (LOF) Phosphatase and tensin homolog (PTEN) AD 158350 Normal/decreased Recurrent infections, lymphoproliferation, autoimmunity, developmental delay
CD19 deficiency CD19 molecule (CD19) AR 107265 Low IgG and IgA and/or IgM Recurrent infections, may have glomerulonephritis
CD81 deficiency CD81 molecule (CD81) AR 186845 Low IgG; low or normal IgA and IgM Recurrent infections, may have glomerulonephritis (CD81 mutation abolishes expression of CD19, thereby phenocopying CD19 mutations)
CD20 deficiency Membrane spanning 4-domains A1 (MS4A1) AR 112210 Low IgG; normal or elevated IgM and IgA Recurrent infections
CD21 deficiency Complement C3d receptor 2 (CR2) AR 120650 Low IgG; impaired anti-pneumococcal response Recurrent infections
TACI deficiency* TNF receptor superfamily member 13B (TNFRSF13B) AR or AD 604907 Low IgG and IgA and/or IgM Variable clinical expression nand penetrance for monoallelic variants
BAFF receptor deficiency TNF receptor superfamily member 13C (TNFRSF13C) AR 606269 Low IgG and IgM Variable clinical expression
TWEAK deficiency TNF superfamily member 12 (TNFSF12) AD 602695 Low IgM and IgA; lack of anti-pneumococcal antibody Pneumonia, bacterial infections, warts, thrombocytopenia, neutropenia
TRNT1 deficiency tRNA nucleotidyl transferase 1 (TRNT1) AR 612907 B cell deficiency and hypogammaglobulinemia Congenital sideroblastic anemia, deafness, developmental delay
NFKB1 deficiency Nuclear factor kappa B subunit 1 (NFKB1) AD 164011 Normal or low IgG, IgA, and IgM; low or normal B cells; low memory B cells Recurrent sinopulmonary infections, COPD, EBV proliferation, autoimmune cytopenias, alopecia and autoimmune thyroiditis
NFKB2 deficiency Nuclear factor kappa B subunit 2 (NFKB2) AD 615577 Low serum IgG, IgA, and IgM; low B cell numbers Recurrent sinopulmonary infections, alopecia and endocrinopathies
IKAROS deficiency IKAROS family zinc finger 1 (IKZF1) AD (haploinsufficiency) 603023 Low IgG, IgA, and IgM; low or normal B cells; B cells and immunoglobulin levels reduce with age Decreased pro-B cells, recurrent sinopulmonary infections, increased risk of ALL, autoimmunity, CVID phenotype
IRF2BP2 deficiency Interferon regulatory factor 2 binding protein 2 (IRF2BP2) AD 615332 Hypogammaglobulinemia; absent IgA Recurrent infections, possible autoimmunity and inflammatory disease
ATP6AP1 deficiency ATPase H+ transporting accessory protein 1 (ATP6AP1) XL 300972 Variable immunoglobulin findings Hepatopathy, leukopenia, low copper
ARHGEF1 deficiency Rho guanine nucleotide exchange factor 1 (ARHGEF1) AR 618459 Hypogammaglobulinemia; lack of antibody Recurrent infections, bronchiectasis
SH3KBP1 (CIN85) deficiency SH3 domain containing kinase binding protein 1 (SH3KBP1) XL 300310 IgM and IgG deficiency; loss of antibody Severe bacterial infections
SEC61A1 deficiency SEC61 translocon subunit alpha 1 (SEC61A1) AD 609213 Hypogammaglobulinemia Severe recurrent respiratory tract infections
RAC2 deficiency Rac family small GTPase 2 (RAC2) AR 602049 Low IgG, IgA, and IgM; low or normal B cells; reduced antibody responses following vaccination Recurrent sinopulmonary infections, selective IgA deficiency, poststreptococcal glomerulonephritis, urticaria
Mannosyl-oligosaccharide glucosidase deficiency Mannosyl-oligosaccharide glucosidase (MOGS) AR 601336 Low IgG, IgA, and IgM; increased B cells; poor antibody responses following vaccination Bacterial and viral infections, severe neurologic disease; also known as CDG-IIb
PIK3CG deficiency Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma (PIK3CG) AR 619802 Reduced memory B cells; hypogammaglobulinemia Recurrent infections, cytopenia/lymphopenia, eosinophilia, splenomegaly, lymphadenopathy, HLH-like
BOB1 deficiency POU class 2 homeobox associating factor 1 (POU2AF1) AR   Reduced memory B cells; agammaglobulinemia Recurrent respiratory infections, possible chronic viral infection of CNS with progressive tetraparesia
Severe reduction in serum IgG and IgA with normal/elevated IgM and normal numbers of B cells, hyper-IgM
AID deficiency Activation-induced cytidine deaminase (AICDA) AR 605258 IgG and IgA decreased; IgM increased; normal memory B cell but lacking somatic hypermutation Bacterial infections, enlarged lymph nodes and germinal centers, autoimmunity
AD 605257 IgG absent or decreased; IgA undetected; IgM increased; normal memory B cells with intact somatic hypermutation Bacterial infections, enlarged lymph nodes and germinal centers, mutations uniquely localize to the nuclear export signal
UNG deficiency Uracil DNA glycosylase (UNG) AR 191525 IgG and IgA decreased; IgM increased Enlarged lymph nodes and germinal centers
INO80 deficiency INO80 complex ATPase subunit (INO80) AR 610169 IgG and IgA decreased; IgM increased Severe bacterial infections
MSH6 deficiency MutS homolog 6 (MSH6) AR 600678 Variable IgG defects; increased IgM in some; normal B cells; low switched memory B cells; immunoglobulin class-switch recombination and somatic hypermutation defects Family or personal history of cancer
CTNNBL1 deficiency Catenin beta-like 1 (CTNNBL1) AR   Reduced memory B cells; immunoglobulin class-switch recombination an somatic hypermutation defects; progressive hypogammaglobulinemia CVID, autoimmune cytopenias, recurrent infections, hyperplastic germinal centers
APRIL deficiency TNF superfamily member 13 (TNFSF13) AR   Normal total B cell counts; reduced memory B cells; hypogammaglobulinemia CVID, chronic but mild infections, alopecia areata
Isotype, light chain, or functional deficiencies with generally normal numbers of B cell
Immunoglobulin heavy-chain mutations and deletions Mutation or chromosomal deletion at 14q32 AR   One or more IgG and/or IgA subclasses as well as IgE may be absent May be asymptomatic
Kappa chain deficiency Immunoglobulin kappa constant (IGKC) AR 147200 All immunoglobulins have lambda light chain Asymptomatic
Isolated IgG subclass deficiency Unknown Unknown   Reduction in one or more IgG subclass Usually asymptomatic; a minority may have poor antibody response to specific and recurrent viral/bacterial infections
IgG subclass deficiency with IgA deficiency Unknown Unknown   Reduced IgA with decreased in one or more IgG subclass Recurrent bacterial infections; may be asymptomatic
Selective IgA deficiency Unknown Unknown   Absent IgA with other isotypes normal; normal subclasses and specific antibodies May be asymptomatic; bacterial infections; autoimmunity mildly increased
Specific antibody deficiency with normal immunoglobulin levels and normal B cells Unknown Unknown   Normal Reduced ability to produce antibodies to specific antigens
Transient hypogammaglobulinemia of infancy Unknown Unknown   IgG and IgA decreased Normal ability to produce antibodies to vaccine antigens, usually not associated with significant infections
CARD11 GOF Caspase recruitment domain family member 11 (CARD11) AD GOF 616452 Polyclonal B cell lymphocytosis due to constitutive NFkB activation Splenomegaly, lymphadenopathy, poor vaccine response
Selective IgM deficiency Unknown Unknown   Absent serum IgM Pneumococcal/bacterial
Total number of mutant genes in table: 45. CVID disorders include several clinical and laboratory phenotypes that may be caused by distinct genetic and/or environmental factors. Some patients with CVID and no known genetic defect have markedly reduced numbers of B cells as well as hypogammaglobulinemia. Identification of causal variants can assist in defining treatment. In addition to monogenic causes on this table, a small minority of patients with X-linked lymphoproliferative disease, WHIM syndrome, ICF, VODI, thymoma with immunodeficiency (Good syndrome), or myelodysplasia are first seen by an immunologist because of recurrent infections, hypogammaglobulinemia, and normal or reduced number of B cells.

IUIS: International Union of Immunological Societies; XL: X linked; AR: autosomal recessive; IBD: inflammatory bowel disease; AD: autosomal dominant; ZIP7: zinc transporter 7; DNA: deoxyribonucleic acid; PU1: hematopoietic transcription factor PU.1; CVID: common variable immunodeficiency; IgG: immunoglobulin G; IgA: immunoglobulin A; IgM: immunoglobulin M; GOF: gain of function; EBV: Epstein-Barr virus; CMV: cytomegalovirus; LOF: loss of function; CD: cluster of differentiation; TACI: transmembrane activator and calcium modulator and cyclophilin ligand interactor; TNF: tumor necrosis factor; BAFF: B cell activating factor; TWEAK: TNF-related weak inducer of apoptosis; tRNA: transfer ribonucleic acid; COPD: chronic obstructive pulmonary disease; ALL: acute lymphoblastic leukemia; CIN85: Cbl-interacting 85 kDa protein; CDG-IIb: congenital disorder of glycosylation type IIb; HLH: hemophagocytic lymphohistiocytosis; BOB1: B cell-specific octamer binding protein 1; CNS: central nervous system; AID: activation-induced cytidine deaminase; APRIL: A proliferation-inducing ligand; IgE: immunoglobulin E; NFkB: nuclear factor kappa B; WHIM: warts, hypogammaglobulinemia, infections, myelokathexis; ICF: immunodeficiency with centromeric instability and facial anomalies; VODI: veno-occlusive disease with immunodeficiency.

* Heterozygous variants in TNFRSF13B have been detected in healthy individuals; thus, such variants are likely to be disease modifying rather than disease causing.
From: Tangye SG, Al-Herz W, Bousfiha A, et al. Human inborn errors of immunity: 2022 update on the classification from the International Union of Immunological Societies Expert Committee. J Clin Immunol 2022; 42:1473. Copyright © 2022 The Authors. Reproduced under the terms of the Creative Commons Attribution License 4.0.
Graphic 139944 Version 1.0

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